Danny Barash - Publications

Journals

• D. Barash §, T. Schlick, M. Israeli, R. Kimmel. (2003): Multiplicative Operator Splitting in Nonlinear Diffusion: from Spatial Splitting to Multiple Timesteps. Journal of Mathematical Imaging and Vision, In Press. PostScript [3554K].
  
  
• D. Barash, L. Yang, X. Qian, T. Schlick §. (2003): Inherent Speedup Limitations in Multiple Timestep/Particle Mesh Ewald Algorithms. Journal of Computational Chemistry, Vol.24, No.1, p.77. PDF [506K].
  
  
• D. Strahs, D. Barash, X. Qian, T. Schlick §. (2003): Sequence-Dependent Solution Structure and Motions of 13 TATA/TBP Complexes. Biopolymers, Accepted. PDF [31M].
  
  
• D. Barash §. (2002): A Fundamental Relationship between Bilateral Filtering, Adaptive Smoothing and the Nonlinear Diffusion Equation. IEEE Transactions on Pattern Analysis and Machine Intelligence, Vol.24, No.6, p.844. PostScript [1145K].
  
  
• D. Barash, A.E. Orel, R. Baer §. (2000): Laser Induced Resonance States as Dynamic Suppressors of Ionization in High Frequency Short Pulses. Physical Review A, Vol.61, 013402. PDF [56K].
  
  
• D. Barash §, A.E. Orel, R. Baer. (2000): A Comment on the Stabilization of a One-Dimensional Short-Range Model Atom in Intense Laser Fields. Journal of Physics B: Atomic, Molecular and Optical Physics, Vol.33, p.1279. PDF [62K].
  
  
• D. Barash §, A.E. Orel, R.V. Vemuri. (2000): A Genetic Search in Frequency Space to Stabilize Atoms by High-Intensity Laser Fields. Journal of Computing and Information Technology, Vol.8, No.2, p.103. PostScript [338K].
  

§: corresponding author

Conferences

• D. Barash, D. Comaniciu. (2003): A Common Viewpoint on Broad Kernel Filtering and Nonlinear Diffusion. Proceedings of the 4th International Conference on Scale-Space Theories in Computer Vision, June 10-12, 2003: Scotland, UK.
  
  
• D. Barash, L. Yang, X. Qian, T. Schlick. (2002): On Incorporating Multiple Timescale Methods into Particle Mesh Ewald for Biomolecular Simulations. CIMMS-IPAM Workshop on Molecular Modeling and Computation: Perspectives and Challenges, November 15-26, 2002: Caltech and UCLA, CA.
  
  
• D. Barash, P. Batcho, X. Qian, T. Schlick. (2002): Efficient Multiple-Timestep Methods for Particle Mesh Ewald Formulations. SIAM 50th Anniversary and Annual Meeting, July 8-12, 2002:Philadelphia, PA.
  
  
• D. Barash, L. Yang, X. Qian, T. Schlick. (2002): On Using Multiple Time Scales with Particle Mesh Ewald for Molecular Dynamics Simulations. First SIAM Conference on the Life Sciences, March 6-8, 2002:Boston, MA.
  
  
• D. Barash. (2002): One-Step Deblurring and Denoising Color Images Using Partial Differential Equations. First SIAM Conference on Imaging Science, March 4-6, 2002:Boston, MA, PostScript [8315K].
  
  
• D. Strahs, D. Barash, X. Qian, T. Schlick. (2002): Principal Component Analysis and Related Decomposition Methods for the Analysis of Biomolecular Dynamics Trajectories. 223rd American Chemical Society National Meeting, April 7-11, 2002:Orlando, FL.
  
  
• D. Barash, L. Yang, X. Qian, S. Broyde, T. Schlick. (2002): A Robust Multiple-Time Step/Particle-Mesh-Ewald Integrator for Simulating Polymerase beta Dynamics Using AMBER. UCSF Symposium on Molecular Simulations in Structural Biology and Drug Discovery, February 21-22, 2002:, San-Francisco, CA.
  
  
• D. Barash. (2001): Bilateral Filtering and Anisotropic Diffusion: Towards a Unified Viewpoint. Third International Conference on ScaleSpace and Morphology, July 7-8, 2001: Vancouver, Canada, PostScript [2646K].
  
  
• D. Barash, M. Israeli, R. Kimmel. (2001): An Accurate Operator Splitting Scheme for Nonlinear Diffusion Filtering. Third International Conference on ScaleSpace and Morphology, July 7-8, 2001: Vancouver, Canada, March 1999, PostScript [3153K].
  
  
• D. Barash. (1999): A Genetic Search in Policy Space for Solving Markov Decision Processes. AAAI Spring Symposium on Search Techniques for Problem Solving under Uncertainty and Incomplete Information, Stanford University, March 1999, PostScript [847K].
  
  
• D. Barash, A.E. Orel, R.V. Vemuri. (1998): Micro Genetic Algorithms in Finding the Optimal Frequency for Stabilizing Atoms by High-Intensity Laser Fields. Late Breaking Paper to the Third Annual Genetic Programming Conference, Madison, WI, July 1998, Postcript[169K].
  
  
• D. Barash. (1997): Stabilization of a One-Dimensional Short-Range Potential in High Intense Laser Fields. Abstract to the Eighteenth Annual West Coast Theoretical Chemistry Conference, Lawrence Berkeley Laboratories, April 1997, Postcript[21K].
  
  

Ph.D. Dissertation

• D. Barash. (1999): Genetic Algorithms Applied to Nonlinear and Complex Domains. Department of Applied Science, University of California, Davis at Lawrence Livermore National Laboratories.Livermore, May 1999, Gzipped Postcript[369K].
  
  

Journal Reviews

• Journal of Mathematical Imaging and Vision
  
  
• IEEE Transactions on Image Processing
  
  
• Program Committee Member, the 4th International Conference on Scale-Space Theories in Computer Vision, 10-12 June, 2003.
  
  

Company Related Publications

• Co-author of 4 Hewlett-Packard patent applications and 3 internal Hewlett-Packard Laboratories technical reports.