Annotating tertiary motifs in RNA structures
2GDI - TPP riboswitch
Statistics of tertiary motifs
Motif |
Number |
Coaxial helix |
6 |
A-minor |
4 |
Ribose zipper |
2 |
Pseudoknot |
0 |
Loop-loop receptor |
2 |
D-loop;T-loop |
0 |
Kissing hairpin |
1 |
Annotated diagram (PDF, EPS)
Structure information of tertiary motifs
- Coaxial helix
ID |
Strand 1 |
Strand 2 |
Seq num |
Chain |
Seq num |
Chain |
1 |
10-19 |
X |
47-51,85-89 |
X |
2 |
21-23,25-27 |
X |
33-38 |
X |
3 |
56-61,63-66 |
X |
73-78,80-83 |
X |
4 |
10-19 |
Y |
47-51,85-89 |
Y |
5 |
21-23,25-27 |
Y |
33-38 |
Y |
6 |
56-61,63-66 |
Y |
73-78,80-83 |
Y |
- A-minor
- Ribose zipper
- Loop-loop receptor
- Kissing hairpin