RNA Structure

Dual Topology: 2_3

Topological Aspects

  • 2 Vertices


  • Eigenvalues
      • 0.0000000000
      6.0000000000


    Examples of actual RNAs corresponding to this structure from RNA databases: 61

    PDB_Chain Type Discovery Method
    1E95_A RNA (5'-(*GP*CP*GP*GP*CP*CP*AP*GP*CP*UP*CP*CP*AP*GSOLUTION NMR
    1KAJ_A RNA PSEUDOKNOT APKSOLUTION NMR
    1KPD_A RNA PSEUDOKNOT APKA27GSOLUTION NMR
    1KPY_A P1-P2 FRAMESHIFTING PSEUDOKNOTSOLUTION NMR
    1KPZ_A P1-P2 frameshifting pseudoknotSOLUTION NMR
    1L2X_A RNA PSEUDOKNOTX-RAY DIFFRACTION
    1L3D_A RNA PSEUDOKNOTX-RAY DIFFRACTION
    1RNK_A RNA PSEUDOKNOTSOLUTION NMR
    1YG3_A ScYLV RNA pseudoknotSOLUTION NMR
    1YG4_A ScYLV RNA pseudoknotSOLUTION NMR
    1YMO_A TELOMERASE RNA P2B-P3 PSEUDOKNOTSOLUTION NMR
    2A43_A RNA PseudoknotX-RAY DIFFRACTION
    2AP0_A C27A Sugarcane Yellow Leaf Virus RNA pseudoknotSOLUTION NMR
    2AP5_A C27A Sugarcane Yellow Leaf Virus RNA pseudoknotSOLUTION NMR
    2G1W_A 5'-R(*GP*GP*GP*GP*UP*GP*GP*CP*UP*CP*CP*CP*CP*UP*APSOLUTION NMR
    2K95_A TELOMERASE RNA P2B-P3 PSEUDOKNOTSOLUTION NMR
    2K96_A TELOMERASE RNA P2B-P3 PSEUDOKNOTSOLUTION NMR
    2L1V_A 36-MERSOLUTION NMR
    2M8K_A RNA (48-MER)SOLUTION NMR
    2RP0_A PEMV-1 MRNA PSEUDOKNOTSOLUTION NMR
    2RP1_A PEMV-1 mRNA pseudoknotSOLUTION NMR
    2TPK_A RNA (MRNA PSEUDOKNOT)SOLUTION NMR
    2XDB_G TOXIX-RAY DIFFRACTION
    3K1V_A PREQ1 RIBOSWITCHX-RAY DIFFRACTION
    437D_A RNA PSEUDOKNOTX-RAY DIFFRACTION
    4ATO_G TOXIX-RAY DIFFRACTION
    4V2S_Q RYDCX-RAY DIFFRACTION
    5KMZ_A Telomerase RNA pseudoknotSOLUTION NMR
    5NZ6_A RNA (41-MER)X-RAY DIFFRACTION
    6CAB_AB RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UPX-RAY DIFFRACTION
    1HVU_I RNA (33 NUCLEOTIDE RNA PSEUDOKNOT)X-RAY DIFFRACTION
    1IBL_YZ ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNAX-RAY DIFFRACTION
    2UU9_XY RNAX-RAY DIFFRACTION
    2UUA_XY RNAX-RAY DIFFRACTION
    2UUC_XY RNAX-RAY DIFFRACTION
    2XD0_H TOXIX-RAY DIFFRACTION
    2XDD_F TOXIX-RAY DIFFRACTION
    3FU2_B PREQ1 RIBOSWITCHX-RAY DIFFRACTION
    4B3M_ZW 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*CPX-RAY DIFFRACTION
    4B3R_ZW 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*CPX-RAY DIFFRACTION
    4B3T_ZW 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*CPX-RAY DIFFRACTION
    4DR4_WV 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)X-RAY DIFFRACTION
    4DR5_WV 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)X-RAY DIFFRACTION
    4QJD_D TWISTER RNA SEQUENCEX-RAY DIFFRACTION
    4QJH_F Twister RibozymeX-RAY DIFFRACTION
    4RMO_B RNA (45-MER)X-RAY DIFFRACTION
    4V83_CV domain 3 of PSIC IGR IRES RNAX-RAY DIFFRACTION
    4XEJ_AIRE IRES RNAX-RAY DIFFRACTION
    5KTJ_A PISTOL (50-MER)X-RAY DIFFRACTION
    5NWQ_A GUANIDINE III RIBOSWITCHX-RAY DIFFRACTION
    5NY8_A RNA (41-MER)X-RAY DIFFRACTION
    5NZ3_A RNA (41-MER)X-RAY DIFFRACTION
    5NZD_A GUANIDINE III RIBOSWITCHX-RAY DIFFRACTION
    5O62_A RNA (41-MER)X-RAY DIFFRACTION
    5O69_A RNA (41-MER)X-RAY DIFFRACTION
    5U4J_xz P-site tRNA fMetELECTRON MICROSCOPY
    6CAO_WY RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*X-RAY DIFFRACTION
    6CAP_WY RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*X-RAY DIFFRACTION
    6CAQ_WY RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*X-RAY DIFFRACTION
    6CAR_WY RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*X-RAY DIFFRACTION
    6CAS_WY RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*X-RAY DIFFRACTION
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