RNA Structure

Dual Topology: 4_27


Topological Aspects

  • 4 Vertices


  • Eigenvalues
    • 0.0000000000
      2.4384472370
      5.0000000000
      6.5615530014


    Examples of actual RNAs corresponding to this structure from RNA databases: 55

    PDB_Chain Type Discovery Method
    1E8O_E 7SLRNAX-RAY DIFFRACTION
    1Y26_X Vibrio vulnificus A-riboswitchX-RAY DIFFRACTION
    1Y27_X Bacillus subtilis xptX-RAY DIFFRACTION
    2B57_A 65-MERX-RAY DIFFRACTION
    2EES_A GUANINE RIBOSWITCHX-RAY DIFFRACTION
    2EET_A GUANINE RIBOSWITCHX-RAY DIFFRACTION
    2EEU_A GUANINE RIBOSWITCHX-RAY DIFFRACTION
    2EEV_A GUANINE RIBOSWITCHX-RAY DIFFRACTION
    2EEW_A GUANINE RIBOSWITCHX-RAY DIFFRACTION
    2G9C_A GUANINE RIBOSWITCHX-RAY DIFFRACTION
    2XNW_A GUANINE RIBOSWITCHX-RAY DIFFRACTION
    2XNZ_A GUANINE RIBOSWITCHX-RAY DIFFRACTION
    2XO0_A GUANINE RIBOSWITCHX-RAY DIFFRACTION
    2XO1_A GUANINE RIBOSWITCHX-RAY DIFFRACTION
    3FO4_A GUANINE RIBOSWITCH C74U MUTANTX-RAY DIFFRACTION
    3FO6_A GUANINE RIBOSWITCHX-RAY DIFFRACTION
    3G4M_A GUANINE RIBOSWITCHX-RAY DIFFRACTION
    3GAO_A GUANINE RIBOSWITCHX-RAY DIFFRACTION
    3GER_A GUANINE RIBOSWITCHX-RAY DIFFRACTION
    3GES_A GUANINE RIBOSWITCHX-RAY DIFFRACTION
    3GOG_A GUANINE RIBOSWITCHX-RAY DIFFRACTION
    3GOT_A GUANINE RIBOSWITCHX-RAY DIFFRACTION
    3LA5_A Adenosine RIboswitchX-RAY DIFFRACTION
    4FE5_B xpt-pbuX guanine riboswitch aptamer domainX-RAY DIFFRACTION
    4FEJ_B A24U MUTANT OF THE B. SUBTILIS XPT-PBUXGUANINE RIX-RAY DIFFRACTION
    4FEL_B U25A/A46G MUTANT OF THE B. SUBTILIS XPT-PBUXGUANIX-RAY DIFFRACTION
    4FEN_B A24U/U25A/A46G MUTANT OF THE B. SUBTILIS XPT-PBUXX-RAY DIFFRACTION
    4FEO_B U25A/A46G/C74U MUTANT OF THE B. SUBTILIS XPT-PBUXX-RAY DIFFRACTION
    4FEP_B A24U/U25A/A46G/C74U MUTANT OF THE B. SUBTILIS XPTX-RAY DIFFRACTION
    4LX5_A MUTATED ADENINE RIBOSWITCH APTAMERX-RAY DIFFRACTION
    4LX6_A Mutated adenine riboswitch aptamerX-RAY DIFFRACTION
    4TZX_X VIBRIO VULNIFICUS ADENINE RIBOSWITCHX-RAY DIFFRACTION
    4TZY_X VIBRIO VULNIFICUS ADENINE RIBOSWITCHX-RAY DIFFRACTION
    4XNR_X VIBRIO VULNIFICUS ADENINE RIBOSWITCHX-RAY DIFFRACTION
    5C7U_B 5'-MONOPHOSPHATE WTGUANINE RIBOSWITCHX-RAY DIFFRACTION
    5KPY_A 5-hydroxytryptophanRNA aptamerX-RAY DIFFRACTION
    5SWE_X Vibrio vulnificus strain 93U204 chromosome II, adeX-RAY DIFFRACTION
    5UZA_X RNA (71-MER)X-RAY DIFFRACTION
    1RY1_E SRP ALU DOMAINELECTRON MICROSCOPY
    2NOQ_B 18S ribosomalRNAELECTRON MICROSCOPY
    3DS7_A 67-MERX-RAY DIFFRACTION
    3IVN_A A-RIBOSWITCHX-RAY DIFFRACTION
    3J0L_a 40S RIBOSOMALRNA FRAGMENTELECTRON MICROSCOPY
    3J0O_a 40S ribosomalRNA fragmentELECTRON MICROSCOPY
    3J0P_a 40S RIBOSOMALRNA FRAGMENTELECTRON MICROSCOPY
    3J0Q_a 40S RIBOSOMALRNA FRAGMENTELECTRON MICROSCOPY
    3RKF_C GUANINE RIBOSWITCHX-RAY DIFFRACTION
    3SKI_A RNA (68-MER)X-RAY DIFFRACTION
    3SKL_B RNA (66-MER)X-RAY DIFFRACTION
    3SKR_A RNA (66-MER)X-RAY DIFFRACTION
    3SKT_A RNA (66-MER)X-RAY DIFFRACTION
    3SKW_A RNA (66-MER)X-RAY DIFFRACTION
    3SKZ_A RNA (68-MER)X-RAY DIFFRACTION
    3SLM_B RNA (68-MER)X-RAY DIFFRACTION
    3SLQ_A RNA (68-MER)X-RAY DIFFRACTION
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