RNA Structure

Dual Topology: 4_4

Topological Aspects

  • 4 Vertices


  • Eigenvalues
      • 0.0000000000
      0.7639320493
      4.0000000000
      5.2360677719


    Examples of actual RNAs corresponding to this structure from RNA databases: 44

    PDB_Chain Type Discovery Method
    1X9C_DCAB 5'-R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CPX-RAY DIFFRACTION
    1X9K_DCAB 5'-R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CPX-RAY DIFFRACTION
    1ZFT_DCAB Hairpin RibozymeX-RAY DIFFRACTION
    1ZFV_DCAB Hairpin RibozymeX-RAY DIFFRACTION
    1ZFX_DCAB Hairpin RibozymeX-RAY DIFFRACTION
    1ZZ5_ACBD 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*C)-3'X-RAY DIFFRACTION
    2A04_ACBD 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*C)-3'X-RAY DIFFRACTION
    2BCY_DCAB Hairpin RibozymeX-RAY DIFFRACTION
    2BCZ_DCAB Hairpin RibozymeX-RAY DIFFRACTION
    2D2K_DCAB Hairpin RibozymeX-RAY DIFFRACTION
    2D2L_DCAB Hairpin RibozymeX-RAY DIFFRACTION
    2FGP_DCAB Hairpin RibozymeX-RAY DIFFRACTION
    2NPY_DCAB Hairpin RibozymeX-RAY DIFFRACTION
    2NPZ_DCAB Hairpin RibozymeX-RAY DIFFRACTION
    2OUE_DCAB Hairpin RibozymeX-RAY DIFFRACTION
    2P7F_DCAB Hairpin RibozymeX-RAY DIFFRACTION
    3B58_BCA Hairpin RibozymeX-RAY DIFFRACTION
    3B5A_BCA Hairpin RibozymeX-RAY DIFFRACTION
    3B5F_BCA Hairpin RibozymeX-RAY DIFFRACTION
    3B5S_BCA 29-mer Loop A and Loop B Ribozyme strandX-RAY DIFFRACTION
    3B91_BCA Hairpin RibozymeX-RAY DIFFRACTION
    3BBI_BCA Hairpin RibozymeX-RAY DIFFRACTION
    3BBK_BCA Hairpin RibozymeX-RAY DIFFRACTION
    3BBM_BCA Hairpin RibozymeX-RAY DIFFRACTION
    3CQS_ABC Hairpin RibozymeX-RAY DIFFRACTION
    3CR1_ABC Hairpin RibozymeX-RAY DIFFRACTION
    3GS1_DCAB Hairpin RibozymeX-RAY DIFFRACTION
    3GS8_DCAB Hairpin RibozymeX-RAY DIFFRACTION
    3I2Q_ABC Hairpin RibozymeX-RAY DIFFRACTION
    3I2R_ABC Hairpin RibozymeX-RAY DIFFRACTION
    3I2S_ABC Hairpin RibozymeX-RAY DIFFRACTION
    3I2U_ABC Hairpin RibozymeX-RAY DIFFRACTION
    3MUR_R C92U MUTANT C-DI-GMP RIBOSWITCHX-RAY DIFFRACTION
    4G6P_BCA Hairpin RibozymeX-RAY DIFFRACTION
    4G6R_DCAB Hairpin RibozymeX-RAY DIFFRACTION
    4G6S_BCA Hairpin RibozymeX-RAY DIFFRACTION
    4K4S_BFCGDH RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*X-RAY DIFFRACTION
    5B2O_B GUIDE RNAX-RAY DIFFRACTION
    5B2Q_B Guide RNAX-RAY DIFFRACTION
    1ZX7_CEDF 5'-R(*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*GP*G)X-RAY DIFFRACTION
    4WZJ_V U4 small nuclear RNA variantX-RAY DIFFRACTION
    5H1S_B 5S RRNAELECTRON MICROSCOPY
    5ZWM_I U4 snRNAELECTRON MICROSCOPY
    5ZWO_I U4 SNRNAELECTRON MICROSCOPY
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