Tree Topology: 4_2
Topological Aspects
- 4 Vertices
- Eigenvalues 0.0000000000
1.0000000000
1.0000000000
4.0000000000
Examples of actual RNAs corresponding to this structure from RNA databases: 150
PDB_Chain | Type | Discovery Method |
---|---|---|
1E8O_E | 7SLRNA | X-RAY DIFFRACTION |
1KH6_A | JIIIabc | X-RAY DIFFRACTION |
1NYI_BA | 5'-R(*GP*CP*CP*GP*AP*AP*AP*CP*UP*CP*GP*UP*AP*AP*GP | X-RAY DIFFRACTION |
1Q29_BA | Ribozyme | X-RAY DIFFRACTION |
1RMN_A | RNA (49-MER) | FLUORESCENCE TRANSFER |
1RY1_E | SRP ALU DOMAIN | ELECTRON MICROSCOPY |
1SER_T | TRNASER | X-RAY DIFFRACTION |
1Y26_X | Vibrio vulnificus A-riboswitch | X-RAY DIFFRACTION |
1Y27_X | Bacillus subtilis xpt | X-RAY DIFFRACTION |
2AKE_B | TRANSFER RNA-TRP | X-RAY DIFFRACTION |
2B57_A | 65-MER | X-RAY DIFFRACTION |
2CZJ_H | tmRNA (63-MER) | X-RAY DIFFRACTION |
2DET_C | TRNA | X-RAY DIFFRACTION |
2DEU_D | TRNA | X-RAY DIFFRACTION |
2DLC_Y | T-RNA (76-MER) | X-RAY DIFFRACTION |
2DR2_B | TRANSFER RNA-TRP | X-RAY DIFFRACTION |
2EES_A | GUANINE RIBOSWITCH | X-RAY DIFFRACTION |
2EET_A | GUANINE RIBOSWITCH | X-RAY DIFFRACTION |
2EEU_A | GUANINE RIBOSWITCH | X-RAY DIFFRACTION |
2EEV_A | GUANINE RIBOSWITCH | X-RAY DIFFRACTION |
2EEW_A | GUANINE RIBOSWITCH | X-RAY DIFFRACTION |
2FK6_R | TRNA(THR) | X-RAY DIFFRACTION |
2G9C_A | GUANINE RIBOSWITCH | X-RAY DIFFRACTION |
2HOP_A | THI-BOX RIBOSWITCH | X-RAY DIFFRACTION |
2KRL_A | RNA (102-MER) | SOLUTION SCATTERING, SOLUTION NMR |
2MHI_A | Medaka telomerase RNA | SOLUTION NMR |
2MTJ_A | RNA (47-MER) | SOLUTION NMR |
2MTK_A | RNA (47-MER) | SOLUTION NMR |
2N7M_X | RNA (92-MER) | SOLUTION NMR |
2OJ3_B | HDV RIBOZYME | X-RAY DIFFRACTION |
2QUS_A | HAMMERHEAD RIBOZYME | X-RAY DIFFRACTION |
2XNW_A | GUANINE RIBOSWITCH | X-RAY DIFFRACTION |
2XNZ_A | GUANINE RIBOSWITCH | X-RAY DIFFRACTION |
2XO0_A | GUANINE RIBOSWITCH | X-RAY DIFFRACTION |
2XO1_A | GUANINE RIBOSWITCH | X-RAY DIFFRACTION |
379D_BA | RNA HAMMERHEAD RIBOZYME | X-RAY DIFFRACTION |
3DS7_A | 67-MER | X-RAY DIFFRACTION |
3EGZ_B | Tetracycline aptamer and artificial riboswitch | X-RAY DIFFRACTION |
3EPL_F | TRNA | X-RAY DIFFRACTION |
3FO4_A | GUANINE RIBOSWITCH C74U MUTANT | X-RAY DIFFRACTION |
3FO6_A | GUANINE RIBOSWITCH | X-RAY DIFFRACTION |
3G4M_A | GUANINE RIBOSWITCH | X-RAY DIFFRACTION |
3GAO_A | GUANINE RIBOSWITCH | X-RAY DIFFRACTION |
3GER_A | GUANINE RIBOSWITCH | X-RAY DIFFRACTION |
3GES_A | GUANINE RIBOSWITCH | X-RAY DIFFRACTION |
3GOG_A | GUANINE RIBOSWITCH | X-RAY DIFFRACTION |
3GOT_A | GUANINE RIBOSWITCH | X-RAY DIFFRACTION |
3HL2_E | TRNASEC | X-RAY DIFFRACTION |
3IVN_A | A-RIBOSWITCH | X-RAY DIFFRACTION |
3J0L_W | TRNA | ELECTRON MICROSCOPY |
3J0O_W | TRNA | ELECTRON MICROSCOPY |
3J46_p | P-tRNA | ELECTRON MICROSCOPY |
3J7Y_B | MT-TRNAVAL | ELECTRON MICROSCOPY |
3J9M_B | mt-tRNAVal | ELECTRON MICROSCOPY |
3JBP_7 | E-tRNA | ELECTRON MICROSCOPY |
3JBU_v | glycine-tRNA | ELECTRON MICROSCOPY |
3LA5_A | Adenosine RIboswitch | X-RAY DIFFRACTION |
3MOJ_A | RNA (69-MER) | X-RAY DIFFRACTION |
3NKB_B | The hepatitis delta virus ribozyme | X-RAY DIFFRACTION |
3QSY_D | TRNA | X-RAY DIFFRACTION |
3RKF_C | GUANINE RIBOSWITCH | X-RAY DIFFRACTION |
3SKI_A | RNA (68-MER) | X-RAY DIFFRACTION |
3SKL_B | RNA (66-MER) | X-RAY DIFFRACTION |
3SKR_A | RNA (66-MER) | X-RAY DIFFRACTION |
3SKT_A | RNA (66-MER) | X-RAY DIFFRACTION |
3SKW_A | RNA (66-MER) | X-RAY DIFFRACTION |
3SKZ_A | RNA (68-MER) | X-RAY DIFFRACTION |
3SLM_B | RNA (68-MER) | X-RAY DIFFRACTION |
3SLQ_A | RNA (68-MER) | X-RAY DIFFRACTION |
3SUH_X | RIBOSWITCH | X-RAY DIFFRACTION |
3SUX_X | Riboswitch | X-RAY DIFFRACTION |
3SUY_X | RIBOSWITCH | X-RAY DIFFRACTION |
3WFQ_B | RNA (73-MER) | X-RAY DIFFRACTION |
3WFR_C | RNA (75-MER) | X-RAY DIFFRACTION |
488D_BAC | RNA RIBOZYME STRAND | X-RAY DIFFRACTION |
4FE5_B | xpt-pbuX guanine riboswitch aptamer domain | X-RAY DIFFRACTION |
4FEJ_B | A24U MUTANT OF THE B. SUBTILIS XPT-PBUXGUANINE RI | X-RAY DIFFRACTION |
4FEL_B | U25A/A46G MUTANT OF THE B. SUBTILIS XPT-PBUXGUANI | X-RAY DIFFRACTION |
4FEN_B | A24U/U25A/A46G MUTANT OF THE B. SUBTILIS XPT-PBUX | X-RAY DIFFRACTION |
4FEO_B | U25A/A46G/C74U MUTANT OF THE B. SUBTILIS XPT-PBUX | X-RAY DIFFRACTION |
4FEP_B | A24U/U25A/A46G/C74U MUTANT OF THE B. SUBTILIS XPT | X-RAY DIFFRACTION |
4JF2_A | PreQ1-II Riboswitch | X-RAY DIFFRACTION |
4MGM_B | TRNA GLYCINE | X-RAY DIFFRACTION |
4O26_E | Telomerase TR | X-RAY DIFFRACTION |
4QK8_A | C-di-AMP riboswitch | X-RAY DIFFRACTION |
4QK9_A | C-di-AMP riboswitch | X-RAY DIFFRACTION |
4QKA_A | C-di-AMP riboswitch | X-RAY DIFFRACTION |
4QLN_A | RNA (117-MER) | X-RAY DIFFRACTION |
4RZD_A | PreQ1-III Riboswitch (Class 3) | X-RAY DIFFRACTION |
4TZX_X | VIBRIO VULNIFICUS ADENINE RIBOSWITCH | X-RAY DIFFRACTION |
4TZY_X | VIBRIO VULNIFICUS ADENINE RIBOSWITCH | X-RAY DIFFRACTION |
4UG0_S6 | HUMAN INITIATOR MET-TRNA-I | ELECTRON MICROSCOPY |
4V5S_AY | A-SITE TRNA G24A TRP-TRNA TRP | X-RAY DIFFRACTION |
4V61_BB | 5S rRNA | ELECTRON MICROSCOPY |
4V6T_AX | formyl-methionine specific initiator transfer RNA | ELECTRON MICROSCOPY |
4V7C_BB | 5S ribosomal RNA | ELECTRON MICROSCOPY |
4V7D_AB | 5S ribosomal RNA | ELECTRON MICROSCOPY |
4V7M_AY | tRNA-Gln | X-RAY DIFFRACTION |
4V8O_AV | PE HYBRID STATE TRNA FMET | X-RAY DIFFRACTION |
4V97_AW | E-SITE TRNA PHE OR A-SITE tRNA Phe | X-RAY DIFFRACTION |
4W29_AX | tRNA | X-RAY DIFFRACTION |
4WC2_B | RNA 75-MER | X-RAY DIFFRACTION |
4WC3_B | RNA 76-MER | X-RAY DIFFRACTION |
4WC4_B | RNA (74-MER) | X-RAY DIFFRACTION |
4WC5_B | RNA (74-MER) | X-RAY DIFFRACTION |
4WC6_B | RNA (75-MER) | X-RAY DIFFRACTION |
4WC7_B | RNA (75-MER) | X-RAY DIFFRACTION |
4WRA_3K | tRNA-Tyr | X-RAY DIFFRACTION |
4WRO_3K | tRNA-Phe | X-RAY DIFFRACTION |
4X0B_B | RNA (77-MER) | X-RAY DIFFRACTION |
4XNR_X | VIBRIO VULNIFICUS ADENINE RIBOSWITCH | X-RAY DIFFRACTION |
5B63_D | TRNA-ARG | X-RAY DIFFRACTION |
5C7U_B | 5'-MONOPHOSPHATE WTGUANINE RIBOSWITCH | X-RAY DIFFRACTION |
5D5L_A | PREQ1-II RIBOSWITCH | X-RAY DIFFRACTION |
5DDO_A | L-glutamine riboswitch (58-MER) | X-RAY DIFFRACTION |
5DDP_A | RNA (61-MER) | X-RAY DIFFRACTION |
5DDQ_A | L-GLUTAMINE RIBOSWITCH RNA (61-MER) | X-RAY DIFFRACTION |
5DDR_B | L-GLUTAMINE RIBOSWITCH RNA (61-MER) | X-RAY DIFFRACTION |
5E81_3L | tRNA-Lys | X-RAY DIFFRACTION |
5EL5_3K | tRNALys | X-RAY DIFFRACTION |
5EL6_3K | tRNALys | X-RAY DIFFRACTION |
5EL7_1L | tRNALys | X-RAY DIFFRACTION |
5GAK_A | The A-site tRNA was modeled based on an E. coli tR | ELECTRON MICROSCOPY |
5IB7_1K | tRNALys | X-RAY DIFFRACTION |
5IB7_3L | tRNALys | X-RAY DIFFRACTION |
5IBB_1K | tRNAVal | X-RAY DIFFRACTION |
5IMQ_4 | P- site tRNA | ELECTRON MICROSCOPY |
5IMQ_5 | E site tRNA | ELECTRON MICROSCOPY |
5K0Y_N | RNA (75-MER) | ELECTRON MICROSCOPY |
5KCR_1x | P-site tRNA | ELECTRON MICROSCOPY |
5KPY_A | 5-hydroxytryptophanRNA aptamer | X-RAY DIFFRACTION |
5NP6_B | P-site tRNA-Gly | ELECTRON MICROSCOPY |
5O2R_x | P-site Ile-tRNA | ELECTRON MICROSCOPY |
5OOL_B | mitochondrial tRNAVal | ELECTRON MICROSCOPY |
5OOM_B | MITOCHONDRIAL TRNAVAL | ELECTRON MICROSCOPY |
5SWE_X | Vibrio vulnificus strain 93U204 chromosome II, ade | X-RAY DIFFRACTION |
5T7V_D | E-site tRNA | ELECTRON MICROSCOPY |
5TC1_R | phage MS2 genome | ELECTRON MICROSCOPY |
5UQ8_z | E-site tRNA Phe | ELECTRON MICROSCOPY |
5UZA_X | RNA (71-MER) | X-RAY DIFFRACTION |
5WFK_y | Phe-tRNA-Phe | ELECTRON MICROSCOPY |
5WWS_C | TRNA | X-RAY DIFFRACTION |
5WWT_C | TRNA | X-RAY DIFFRACTION |
5X6B_P | TRNACYS | X-RAY DIFFRACTION |
5ZLU_DD | P-site tRNA | ELECTRON MICROSCOPY |
6AZ1_4 | E-SITE TRNA | ELECTRON MICROSCOPY |
6BOH_NC | tRNA | X-RAY DIFFRACTION |
6D90_3 | P-tRNA | ELECTRON MICROSCOPY |
6ENJ_x | proline tRNA | ELECTRON MICROSCOPY |
6GSJ_3L | tRNAThr | X-RAY DIFFRACTION |