Tree Topology: 5_1
Topological Aspects
- 5 Vertices
- Eigenvalues 0.0000000000
0.3819660246
1.3819659948
2.6180338860
3.6180338860
Examples of actual RNAs corresponding to this structure from RNA databases: 79
PDB_Chain | Type | Discovery Method |
---|---|---|
1D4R_BA | 29-MER OF MODIFIED SRP RNA HELIX 6 | X-RAY DIFFRACTION |
1KXK_A | ai5g group II Self-splicing intron | X-RAY DIFFRACTION |
1P5O_A | 77-MER | SOLUTION NMR |
1P5P_A | 77-MER | SOLUTION NMR |
1RY1_NM | RNA (31-MER) | ELECTRON MICROSCOPY |
1XJR_A | s2m RNA | X-RAY DIFFRACTION |
1ZX7_CEDF | 5'-R(*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*GP*G) | X-RAY DIFFRACTION |
1ZZ5_ACBD | 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*C)-3' | X-RAY DIFFRACTION |
2A04_ACBD | 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*C)-3' | X-RAY DIFFRACTION |
2D1A_AB | RNA | SOLUTION NMR |
2GCS_B | glmS ribozyme RNA | X-RAY DIFFRACTION |
2GCV_B | GLMS RIBOZYME RNA | X-RAY DIFFRACTION |
2GM0_AB | RNA (35-MER) | SOLUTION NMR |
2H0S_B | GLMS RIBOZYME RNA | X-RAY DIFFRACTION |
2H0W_B | GLMS RIBOZYME RNA | X-RAY DIFFRACTION |
2H0X_B | GLMS RIBOZYME RNA | X-RAY DIFFRACTION |
2H0Z_B | GLMS RIBOZYME RNA | X-RAY DIFFRACTION |
2HO6_B | GLMS RIBOZYME RNA | X-RAY DIFFRACTION |
2HO7_B | GLMS RIBOZYME RNA | X-RAY DIFFRACTION |
2J28_8 | 4.5S SIGNAL RECOGNITION PARTICLE RNA | ELECTRON MICROSCOPY |
2L1F_B | RNA (66-MER) | SOLUTION NMR |
2Z74_B | GLMS RIBOZYME RNA | X-RAY DIFFRACTION |
2Z75_B | GLMS RIBOZYME RNA | X-RAY DIFFRACTION |
3B4A_B | GLMS RIBOZYME RNA | X-RAY DIFFRACTION |
3B4B_B | GLMS RIBOZYME RNA | X-RAY DIFFRACTION |
3J45_4 | 23S ribosomal RNA | ELECTRON MICROSCOPY |
3J45_5 | 23S RIBOSOMAL RNA | ELECTRON MICROSCOPY |
3J46_4 | 23S ribosomal RNA | ELECTRON MICROSCOPY |
3JB9_C | U5 snRNA | ELECTRON MICROSCOPY |
3P59_EACGBDFH | RNA (5'-R(*CP*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP* | X-RAY DIFFRACTION |
3RW6_H | constitutive transport element(CTE)of Mason-Pfizer | X-RAY DIFFRACTION |
3U4M_B | RNA (80-MER) | X-RAY DIFFRACTION |
3U56_B | RNA (80-MER) | X-RAY DIFFRACTION |
3UMY_B | RNA (80-MER) | X-RAY DIFFRACTION |
4K4S_BFCGDH | RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP* | X-RAY DIFFRACTION |
4KZD_R | RNA (84-MER) | X-RAY DIFFRACTION |
4KZE_R | RNA (84-MER) | X-RAY DIFFRACTION |
4LCK_F | T-BOX RIBOSWITCH STEM I | X-RAY DIFFRACTION |
4MEG_B | (121-MER) RIBOZYME | X-RAY DIFFRACTION |
4MEH_B | (122-MER) RIBOZYME | X-RAY DIFFRACTION |
4MGN_A | glyQS T box riboswitch | X-RAY DIFFRACTION |
4N0T_B | U6 SNRNA | X-RAY DIFFRACTION |
4Q9Q_R | SPINACH RNA APTAMER | X-RAY DIFFRACTION |
4Q9R_R | SPINACH RNA APTAMER | X-RAY DIFFRACTION |
4QG3_B | FRAGMENT OF 23S RRNA | X-RAY DIFFRACTION |
4QVI_B | fragment of 23S rRNA | X-RAY DIFFRACTION |
4TS2_YX | Spinach RNA aptamer, bimolecular construct | X-RAY DIFFRACTION |
4TZP_F | GLYQ T-BOX STEM I | X-RAY DIFFRACTION |
4V61_BC | 4.8S rRNA | ELECTRON MICROSCOPY |
4WZJ_V | U4 small nuclear RNA variant | X-RAY DIFFRACTION |
4XW7_A | PFL RNA | X-RAY DIFFRACTION |
4XWF_A | pfl RNA | X-RAY DIFFRACTION |
5AKA_7 | 4.5S ribosomal RNA | ELECTRON MICROSCOPY |
5B2O_B | GUIDE RNA | X-RAY DIFFRACTION |
5B2Q_B | Guide RNA | X-RAY DIFFRACTION |
5DCV_D | RNA (47-MER) | X-RAY DIFFRACTION |
5H1S_B | 5S RRNA | ELECTRON MICROSCOPY |
5IEM_A | RNA (57-MER) | SOLUTION NMR |
5LI0_B | 5S ribosomal RNA | ELECTRON MICROSCOPY |
5LJ3_U | U5 SNRNA (SMALL NUCLEAR RNA) | ELECTRON MICROSCOPY |
5LJ5_U | U5 SNRNA (SMALL NUCLEAR RNA) | ELECTRON MICROSCOPY |
5LYS_B | 7SK RNA | X-RAY DIFFRACTION |
5LYU_B | 7SK RNA | X-RAY DIFFRACTION |
5LYV_B | RNA (57-MER) | X-RAY DIFFRACTION |
5MPS_5 | U5 SNRNA | ELECTRON MICROSCOPY |
5MQ0_5 | SACCHAROMYCES CEREVISIAE STRAIN WI_C_MBSP_4 CHROMO | ELECTRON MICROSCOPY |
5MQF_5 | HOMO SAPIENS U5 A SMALL NUCLEAR RNA | ELECTRON MICROSCOPY |
5ND8_B | 5S ribosomal RNA | ELECTRON MICROSCOPY |
5NPM_B | 23S RIBOSOMAL RNA | X-RAY DIFFRACTION |
5O9Z_5 | Homo sapiens U5 A small nuclear RNA | ELECTRON MICROSCOPY |
5VT0_R | ESCHERICHIA COLI 6S RNA DERIVATIVE (112-MER) | ELECTRON MICROSCOPY |
5WSG_E | Saccharomyces cerevisiae S288c SNR6 snRNA | ELECTRON MICROSCOPY |
5XTM_D | RNA (47-MER) | X-RAY DIFFRACTION |
5Y88_D | U6 SNRNA | ELECTRON MICROSCOPY |
5YLZ_D | U6 SNRNA | ELECTRON MICROSCOPY |
5ZWM_I | U4 snRNA | ELECTRON MICROSCOPY |
5ZWO_I | U4 SNRNA | ELECTRON MICROSCOPY |
6B14_R | RNA (86-MER) | X-RAY DIFFRACTION |
6B3K_R | RNA (83-MER),RNA (83-MER) | X-RAY DIFFRACTION |