Tree Topology: 5_2
Topological Aspects
- 5 Vertices
- Eigenvalues 0.0000000000
0.5188056827
1.0000000000
2.3111078739
4.1700863838
Examples of actual RNAs corresponding to this structure from RNA databases: 73
PDB_Chain | Type | Discovery Method |
---|---|---|
1C04_E | 23S RRNA FRAGMENT | X-RAY DIFFRACTION |
1DK1_B | RRNA FRAGMENT | X-RAY DIFFRACTION |
1F7Y_B | 16S RIBOSOMAL RNA FRAGMENT | X-RAY DIFFRACTION |
1FOQ_B | BACTERIOPHAGE PHI29 PROHEAD RNA | ELECTRON MICROSCOPY |
1HC8_C | 58 NUCLEOTIDE RIBOSOMAL 23S RNA DOMAIN | X-RAY DIFFRACTION |
1J2B_C | tRNA(Val) | X-RAY DIFFRACTION |
1MMS_C | 23S RIBOSOMAL RNA | X-RAY DIFFRACTION |
1OLN_C | RNA | THEORETICAL MODEL |
1QA6_C | 58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN | X-RAY DIFFRACTION |
1UN6_F | 5S RIBOSOMAL RNA | X-RAY DIFFRACTION |
1Y39_C | 58 NUCLEOTIDE RIBOSOMAL 23S RNA DOMAIN | X-RAY DIFFRACTION |
2HGH_B | 55-MER | SOLUTION NMR |
2JQ7_B | RIBOSOMAL RNA | SOLUTION NMR |
2LU0_A | RNA (49-MER) | SOLUTION NMR |
2NC1_A | IRES RNA (67-MER) | SOLUTION NMR |
2WWB_D | 5.8S RRNA | ELECTRON MICROSCOPY |
3B4C_B | GLMS RIBOZYME RNA | X-RAY DIFFRACTION |
3E5C_A | SMK box (SAM-III) Riboswitch | X-RAY DIFFRACTION |
3E5E_A | SMK BOX (SAM-III) RIBOSWITCH FOR RNA | X-RAY DIFFRACTION |
3E5F_A | SMK BOX (SAM-III) RIBOSWITCH FOR RNA | X-RAY DIFFRACTION |
3G4S_9 | 5S RIBOSOMAL RNA | X-RAY DIFFRACTION |
3JCS_5 | 26S epsilon ribosomal RNA | ELECTRON MICROSCOPY |
3PIO_Y | 5S RIBOSOMAL RNA | X-RAY DIFFRACTION |
3R4F_A | pRNA | X-RAY DIFFRACTION |
3SD3_A | TETRAHYDROFOLATE RIBOSWITCH | X-RAY DIFFRACTION |
4LVV_A | THF RIBOSWITCH | X-RAY DIFFRACTION |
4LVW_A | THF RIBOSWITCH | X-RAY DIFFRACTION |
4LVX_A | THF RIBOSWITCH | X-RAY DIFFRACTION |
4LVY_A | THF RIBOSWITCH | X-RAY DIFFRACTION |
4LVZ_A | THF riboswitch | X-RAY DIFFRACTION |
4LW0_A | THF RIBOSWITCH | X-RAY DIFFRACTION |
4NYG_A | THIM TPP RIBOSWITCH | X-RAY DIFFRACTION |
4OQU_A | SAM-I/IV riboswitch | X-RAY DIFFRACTION |
4PQV_A | XRN1-resistant flaviviral RNA | X-RAY DIFFRACTION |
4UN3_A | SGRNA | X-RAY DIFFRACTION |
4UN4_A | SGRNA | X-RAY DIFFRACTION |
4UN5_A | SGRNA | X-RAY DIFFRACTION |
4V4G_BA | 5S RIBOSOMAL RNA | X-RAY DIFFRACTION |
4V4V_B9 | 5S ribosomal RNA | ELECTRON MICROSCOPY |
4V7L_AW | tRNA-Gln | X-RAY DIFFRACTION |
4V92_AZ | RNA OF CRICKET-PARALYSIS-VIRUS-IRES | ELECTRON MICROSCOPY |
4ZT0_D | single-guide RNA | X-RAY DIFFRACTION |
4ZT9_D | SINGLE-GUIDE RNA | X-RAY DIFFRACTION |
5B2R_A | GUIDE RNA | X-RAY DIFFRACTION |
5B2S_A | GUIDE RNA | X-RAY DIFFRACTION |
5B2T_A | GUIDE RNA | X-RAY DIFFRACTION |
5C7W_C | 5'-MONOPHOSPHATE Z | X-RAY DIFFRACTION |
5DUN_A | RNA (54-MER) | X-RAY DIFFRACTION |
5E7K_3L | tRNALys | X-RAY DIFFRACTION |
5FL8_z | 5S ribosomal RNA | ELECTRON MICROSCOPY |
5FQ5_A | SGRNA | X-RAY DIFFRACTION |
5FW1_A | SGRNA | X-RAY DIFFRACTION |
5FW2_A | SGRNA | X-RAY DIFFRACTION |
5FW3_A | SGRNA | X-RAY DIFFRACTION |
5G2Y_A | GROUP II INTRON | ELECTRON MICROSCOPY |
5GM6_D | Saccharomyces cerevisiae strain CDRDR_sf_H chromos | ELECTRON MICROSCOPY |
5GMK_D | U5 SNRNA | ELECTRON MICROSCOPY |
5JCS_z | 5S ribosomal RNA | ELECTRON MICROSCOPY |
5LKS_L7 | 5S ribosomal RNA | ELECTRON MICROSCOPY |
5LQW_5 | U5 SNRNA | ELECTRON MICROSCOPY |
5TPY_A | RNA (71-MER) | X-RAY DIFFRACTION |
5U33_B | SGRNA | X-RAY DIFFRACTION |
5VW1_C | SGRNA | X-RAY DIFFRACTION |
5WFS_y | Phe-tRNA-Phe | ELECTRON MICROSCOPY |
5WSG_D | U5 SNRNA | ELECTRON MICROSCOPY |
5WTI_B | RNA (123-MER) | X-RAY DIFFRACTION |
5XXB_3 | 5S RNA | ELECTRON MICROSCOPY |
5Y88_B | U5 SNRNA | ELECTRON MICROSCOPY |
5YLZ_B | U5 SNRNA | ELECTRON MICROSCOPY |
6BK8_5 | U5 SNRNA | ELECTRON MICROSCOPY |
6C0F_6 | ITS2 | ELECTRON MICROSCOPY |
6CB1_6 | ITS2 | ELECTRON MICROSCOPY |
6GSL_3L | tRNAArg | X-RAY DIFFRACTION |