RNA Structure

Tree Topology: 6_3

Topological Aspects

  • 6 Vertices


  • Eigenvalues
    • 0.0000000000
    0.3819660246
    0.6972243786
    2.0000000000
    2.6180338860
    4.3027758598


Examples of actual RNAs corresponding to this structure from RNA databases: 85

PDB_Chain Type Discovery Method
1VVJ_RB5S rRNAX-RAY DIFFRACTION
1YSH_BRNA (101-MER)ELECTRON MICROSCOPY
2CKY_ANUCLEIC ACIDX-RAY DIFFRACTION
2GDI_XTPP RIBOSWITCHX-RAY DIFFRACTION
2HOJ_ATHI-BOX RIBOSWITCHX-RAY DIFFRACTION
2HOK_ATHI-BOX RIBOSWITCHX-RAY DIFFRACTION
2HOL_ATHI-BOX RIBOSWITCHX-RAY DIFFRACTION
2HOM_ATHI-BOX RIBOSWITCHX-RAY DIFFRACTION
2HOO_ATHI-BOX RIBOSWITCHX-RAY DIFFRACTION
2N3Q_ARNA (62-MER)SOLUTION NMR
2N3R_ARNA (62-MER)SOLUTION NMR
2OIU_PL1 Ribozyme RNA LigaseX-RAY DIFFRACTION
2QA4_95S RIBOSOMAL RNAX-RAY DIFFRACTION
3CCJ_95S RIBOSOMAL RNAX-RAY DIFFRACTION
3CCR_95S RIBOSOMAL RNAX-RAY DIFFRACTION
3CCS_95S RIBOSOMAL RNAX-RAY DIFFRACTION
3CUL_DRNA (92-MER)X-RAY DIFFRACTION
3CUN_CRNA (92-MER)X-RAY DIFFRACTION
3D2G_ATPP-SPECIFIC RIBOSWITCHX-RAY DIFFRACTION
3D2V_ATPP-specific riboswitchX-RAY DIFFRACTION
3D2X_ATPP-SPECIFIC RIBOSWITCHX-RAY DIFFRACTION
3J3V_BRIBOSOME RNA 5SELECTRON MICROSCOPY
3JCD_B5S ribosomal RNAELECTRON MICROSCOPY
3JCE_B5S ribosomal RNAELECTRON MICROSCOPY
3JCJ_05S ribosomal RNAELECTRON MICROSCOPY
3K0J_ERNA (87-MER)X-RAY DIFFRACTION
3PIP_Y5S RIBOSOMAL RNAX-RAY DIFFRACTION
4L47_YB5S rRNAX-RAY DIFFRACTION
4LFZ_RB5S rRNAX-RAY DIFFRACTION
4LNT_YB5S rRNAX-RAY DIFFRACTION
4LT8_YB5S rRNAX-RAY DIFFRACTION
4NYA_ATHIM TPP RIBOSWITCHX-RAY DIFFRACTION
4NYB_ATHIM TPP RIBOSWITCHX-RAY DIFFRACTION
4NYC_ATHIM TPP RIBOSWITCHX-RAY DIFFRACTION
4NYD_ATHIM TPP RIBOSWITCHX-RAY DIFFRACTION
4V5E_DB5S RIBOSOMAL RNAX-RAY DIFFRACTION
4V67_BB5S RRNAX-RAY DIFFRACTION
4V7X_BB5S ribosomal RNAX-RAY DIFFRACTION
4V7Y_BB5S ribosomal RNAX-RAY DIFFRACTION
4V7Z_BB5S ribosomal RNAX-RAY DIFFRACTION
4V84_BB5S ribosomal RNAX-RAY DIFFRACTION
4V8F_AB5S RIBOSOMAL RNAX-RAY DIFFRACTION
4V8G_DB5S RIBOSOMAL RNAX-RAY DIFFRACTION
4V8O_BB5S RIBOSOMAL RNAX-RAY DIFFRACTION
4V9A_BB5S RIBOSOMAL RNAX-RAY DIFFRACTION
4V9H_BB5S RIBOSOMAL RNAX-RAY DIFFRACTION
4V9P_CB5S RIBOSOMAL RNAX-RAY DIFFRACTION
4W2H_DB5S RIBOSOMAL RNAX-RAY DIFFRACTION
4WFL_ARNAX-RAY DIFFRACTION
4WFM_ABacillus subtilis small cytoplasmic RNA (scRNA),RNX-RAY DIFFRACTION
4WQR_165S RIBOSOMAL RNAX-RAY DIFFRACTION
4WR6_165S RIBOSOMAL RNAX-RAY DIFFRACTION
4WRA_165S RIBOSOMAL RNAX-RAY DIFFRACTION
4WSD_165S RIBOSOMAL RNAX-RAY DIFFRACTION
4WSM_1J5S ribosomal RNAX-RAY DIFFRACTION
4WT1_165S RIBOSOMAL RNAX-RAY DIFFRACTION
4WZO_165S ribosomal RNAX-RAY DIFFRACTION
4ZER_2B5S ribosomal RNAX-RAY DIFFRACTION
5D6G_023S RIBOSOMAL RNAX-RAY DIFFRACTION
5D8B_AD5S RIBOSOMAL RNAX-RAY DIFFRACTION
5D8H_A23S ribosomal RNAX-RAY DIFFRACTION
5E7K_165S rRNAX-RAY DIFFRACTION
5EL4_165S ribosomal RNAX-RAY DIFFRACTION
5IB8_165S ribosomal RNAX-RAY DIFFRACTION
5IBB_165S ribosomal RNAX-RAY DIFFRACTION
5J3C_YB5S ribosomal RNAX-RAY DIFFRACTION
5JVH_Y5S RIBOSOMAL RNAX-RAY DIFFRACTION
5LZA_B5S ribosomal RNAELECTRON MICROSCOPY
5LZE_B5S ribosomal RNAELECTRON MICROSCOPY
5MLC_B5S RIBOSOMAL RNA, CHLOROPLASTICELECTRON MICROSCOPY
5MMI_B5S ribosomal RNAELECTRON MICROSCOPY
5MMM_B5S ribosomal RNAELECTRON MICROSCOPY
5NGM_AB5S Ribosomal RNAELECTRON MICROSCOPY
5NJT_V5S ribosomal RNAELECTRON MICROSCOPY
5O60_B5S RRNAELECTRON MICROSCOPY
5O61_B5S rRNAELECTRON MICROSCOPY
5XYM_B5S RNAELECTRON MICROSCOPY
5ZLU_X5S ribosomal RNAELECTRON MICROSCOPY
6B4V_GB5S ribosomal RNAX-RAY DIFFRACTION
6BOH_HB5S ribosomal RNAX-RAY DIFFRACTION
6D90_75S rRNAELECTRON MICROSCOPY
6ERI_Ax5S ribosomal RNAELECTRON MICROSCOPY
6FXC_AB5S ribosomal RNAELECTRON MICROSCOPY
6GSK_165S ribosomal RNAX-RAY DIFFRACTION
3JBU_a5S rRNAELECTRON MICROSCOPY
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