Database of RNA Tree Graphs

 

List of RNA Tree Graphs by Number of Vertices:   

                                                               2      3      4      5      6      7      8      9      10      11      12      13     


10 VERTICES

Number of Possible RNA Topologies: 106
Number of Motifs Found: 14
Number of Missing Motifs: 92

 

To learn more about an RNA topology, please click on its tree graph.

These graphs have been ordered according to the second smallest eigenvalue of their Laplacian matrix (λ2 is given).

**Please Note: Red graphs symbolize topologies that have been discovered in naturally occurring structures, while blue and black graphs denote "missing motifs" that have not yet been discovered in nature.
Missing motifs are subdivided into two categories: topologies predicted by k-NN clustering to be RNA-like, or likely to be discovered in naturually occuring RNAs (blue graphs) and topologies predicted by k-NN clustering to be non-RNA-like, or not expected to be found in nature (black graphs).
 

ID: (10,1)
= 0.0978869721

 
 
 

ID: (10,2)
= 0.1028800234

 
 
 

ID: (10,3)
= 0.1087801531

 
 
 

ID: (10,4)
= 0.1099883914

 
 
 

ID: (10,5)
= 0.1147966310

 
 
 

ID: (10,6)
= 0.1172460988

 
 
 

ID: (10,7)
= 0.1172460988

 
 
 

ID: (10,8)
= 0.1206147596

 
 
 

ID: (10,9)
= 0.1231283024

 
 
 

ID: (10,10)
= 0.1235741228

 
 
 

ID: (10,11)
= 0.1257318407

 
 
 

ID: (10,12)
= 0.1277237833

 
 
 

ID: (10,13)
= 0.1277237833

 
 
 

ID: (10,14)
= 0.1287729442

 
 
 

ID: (10,15)
= 0.1317377985

 
 
 

ID: (10,16)
= 0.1338017434

 
 
 

ID: (10,17)
= 0.1352537274

 
 
 

ID: (10,18)
= 0.1370465606

 
 
 

ID: (10,19)
= 0.1378129572

 
 
 

ID: (10,20)
= 0.1391941458

 
 
 

ID: (10,21)
= 0.1391941458

 
 
 

ID: (10,22)
= 0.1397511065

 
 
 

ID: (10,23)
= 0.1442274898

 
 
 

ID: (10,24)
= 0.1442274898

 
 
 

ID: (10,25)
= 0.1465769559

 
 
 

ID: (10,26)
= 0.1472775936

 
 
 

ID: (10,27)
= 0.1478922814

 
 
 

ID: (10,28)
= 0.1486653835

 
 
 

ID: (10,29)
= 0.1486653835

 
 
 

ID: (10,30)
= 0.1489885151

 
 
 

ID: (10,31)
= 0.1512222737

 
 
 

ID: (10,32)
= 0.1535340846

 
 
 

ID: (10,33)
= 0.1560905129

 
 
 

ID: (10,34)
= 0.1566456854

 
 
 

ID: (10,35)
= 0.1591592133

 
 
 

ID: (10,36)
= 0.1600496024

 
 
 

ID: (10,37)
= 0.1614052951

 
 
 

ID: (10,38)
= 0.1626082361

 
 
 

ID: (10,39)
= 0.1639588773

 
 
 

ID: (10,40)
= 0.1640159637

 
 
 

ID: (10,41)
= 0.1648154855

 
 
 

ID: (10,42)
= 0.1654790044

 
 
 

ID: (10,43)
= 0.1695367694

 
 
 

ID: (10,44)
= 0.1699813902

 
 
 

ID: (10,45)
= 0.1704362184

 
 
 

ID: (10,46)
= 0.1723313928

 
 
 

ID: (10,47)
= 0.1729090810

 
 
 

ID: (10,48)
= 0.1769030243

 
 
 

ID: (10,49)
= 0.1772018075

 
 
 

ID: (10,50)
= 0.1774503291

 
 
 

ID: (10,51)
= 0.1774886549

 
 
 

ID: (10,52)
= 0.1791777164

 
 
 

ID: (10,53)
= 0.1799816340

 
 
 

ID: (10,54)
= 0.1858885884

 
 
 

ID: (10,55)
= 0.1860676408

 
 
 

ID: (10,56)
= 0.1874540001

 
 
 

ID: (10,57)
= 0.1881040037

 
 
 

ID: (10,58)
= 0.1897770166

 
 
 

ID: (10,59)
= 0.1902140826

 
 
 

ID: (10,60)
= 0.1919571757

 
 
 

ID: (10,61)
= 0.1966889650

 
 
 

ID: (10,62)
= 0.1980622560

 
 
 

ID: (10,63)
= 0.1980622560

 
 
 

ID: (10,64)
= 0.1980622560

 
 
 

ID: (10,65)
= 0.1980622560

 
 
 

ID: (10,66)
= 0.2015428990

 
 
 

ID: (10,67)
= 0.2021756470

 
 
 

ID: (10,68)
= 0.2022074610

 
 
 

ID: (10,69)
= 0.2075905651

 
 
 

ID: (10,70)
= 0.2075946927

 
 
 

ID: (10,71)
= 0.2087121457

 
 
 

ID: (10,72)
= 0.2087121457

 
 
 

ID: (10,73)
= 0.2099648863

 
 
 

ID: (10,74)
= 0.2153553516

 
 
 

ID: (10,75)
= 0.2183228731

 
 
 

ID: (10,76)
= 0.2205563486

 
 
 

ID: (10,77)
= 0.2207399160

 
 
 

ID: (10,78)
= 0.2222361416

 
 
 

ID: (10,79)
= 0.2263056338

 
 
 

ID: (10,80)
= 0.2317920327

 
 
 

ID: (10,81)
= 0.2330372185

 
 
 

ID: (10,82)
= 0.2357198745

 
 
 

ID: (10,83)
= 0.2357352525

 
 
 

ID: (10,84)
= 0.2365663350

 
 
 

ID: (10,85)
= 0.2370237559

 
 
 

ID: (10,86)
= 0.2435696274

 
 
 

ID: (10,87)
= 0.2441520840

 
 
 

ID: (10,88)
= 0.2535149157

 
 
 

ID: (10,89)
= 0.2560292780

 
 
 

ID: (10,90)
= 0.2592202425

 
 
 

ID: (10,91)
= 0.2641709745

 
 
 

ID: (10,92)
= 0.2679491937

 
 
 

ID: (10,93)
= 0.2679491937

 
 
 

ID: (10,94)
= 0.2679491937

 
 
 

ID: (10,95)
= 0.2766628861

 
 
 

ID: (10,96)
= 0.2971462607

 
 
 

ID: (10,97)
= 0.2984378934

 
 
 

ID: (10,98)
= 0.3030045927

 
 
 

ID: (10,99)
= 0.3087322116

 
 
 

ID: (10,100)
= 0.3130182028

 
 
 

ID: (10,101)
= 0.3450891674

 
 
 

ID: (10,102)
= 0.3819660246

 
 
 

ID: (10,103)
= 0.3819660246

 
 
 

ID: (10,104)
= 0.3819660246

 
 
 

ID: (10,105)
= 0.4354628026

 
 
 

ID: (10,106)
= 1.0000000000

 
 
 



Because the structures of the 5S rRNA database could not be located in 2010 and was produced using Mfold in 2004:

Tree (10,70) has been corrected from existing in (2004) to RNA-like in (2010)
Page | by Dr. Radut