Database of RNA Tree Graphs

 

List of RNA Tree Graphs by Number of Vertices:   

                                                               2      3      4      5      6      7      8      9      10      11      12      13     


7 VERTICES


Number of Possible RNA Topologies: 11
Number of Motifs Found: 10
Number of Missing Motifs: 1


 

To learn more about an RNA topology, please click on its tree graph.

These graphs have been ordered according to the second smallest eigenvalue of their Laplacian matrix (λ2 is given).

**Please Note: Red graphs symbolize topologies that have been discovered in naturally occurring structures, while blue and black graphs denote "missing motifs" that have not yet been discovered in nature.
Missing motifs are subdivided into two categories: topologies predicted by k-NN clustering to be RNA-like, or likely to be discovered in naturually occuring RNAs (blue graphs) and topologies predicted by k-NN clustering to be non-RNA-like, or not expected to be found in nature (black graphs).
 

ID: (7,1)
= 0.1980622560

 
 
 

ID: (7,2)
= 0.2253770977

 
 
 

ID: (7,3)
= 0.2603226900

 
 
 

ID: (7,4)
= 0.2679491937

 
 
 

ID: (7,5)
= 0.2955321968

 
 
 

ID: (7,6)
= 0.3217196465

 
 
 

ID: (7,7)
= 0.3819660246

 
 
 

ID: (7,8)
= 0.3819660246

 
 
 

ID: (7,9)
= 0.3983208835

 
 
 

ID: (7,10)
= 0.4659298062

 
 
 

ID: (7,11)
= 1.0000000000

 
 
 



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