Database of RNA Tree Graphs

 

List of RNA Tree Graphs by Number of Vertices:   

                                                               2      3      4      5      6      7      8      9      10      11      12      13     


9 VERTICES

Number of Possible RNA Topologies: 47
Number of Motifs Found: 9
Number of Missing Motifs: 38

 

To learn more about an RNA topology, please click on its tree graph.

These graphs have been ordered according to the second smallest eigenvalue of their Laplacian matrix (λ2 is given).

**Please Note: Red graphs symbolize topologies that have been discovered in naturally occurring structures, while blue and black graphs denote "missing motifs" that have not yet been discovered in nature.
Missing motifs are subdivided into two categories: topologies predicted by k-NN clustering to be RNA-like, or likely to be discovered in naturually occuring RNAs (blue graphs) and topologies predicted by k-NN clustering to be non-RNA-like, or not expected to be found in nature (black graphs).
 

ID: (9,1)
= 0.1206147596

 
 
 

ID: (9,2)
= 0.1288751066

 
 
 

ID: (9,3)
= 0.1391941458

 
 
 

ID: (9,4)
= 0.1404187828

 
 
 

ID: (9,5)
= 0.1487438530

 
 
 

ID: (9,6)
= 0.1505716443

 
 
 

ID: (9,7)
= 0.1538128853

 
 
 

ID: (9,8)
= 0.1626924723

 
 
 

ID: (9,9)
= 0.1649243534

 
 
 

ID: (9,10)
= 0.1657568216

 
 
 

ID: (9,11)
= 0.1708386093

 
 
 

ID: (9,12)
= 0.1729090810

 
 
 

ID: (9,13)
= 0.1774231046

 
 
 

ID: (9,14)
= 0.1830442697

 
 
 

ID: (9,15)
= 0.1862307191

 
 
 

ID: (9,16)
= 0.1876032054

 
 
 

ID: (9,17)
= 0.1883639395

 
 
 

ID: (9,18)
= 0.1952873915

 
 
 

ID: (9,19)
= 0.1980622560

 
 
 

ID: (9,20)
= 0.1980622560

 
 
 

ID: (9,21)
= 0.2022320032

 
 
 

ID: (9,22)
= 0.2042603046

 
 
 

ID: (9,23)
= 0.2087121457

 
 
 

ID: (9,24)
= 0.2117858529

 
 
 

ID: (9,25)
= 0.2201288640

 
 
 

ID: (9,26)
= 0.2216537148

 
 
 

ID: (9,27)
= 0.2232391983

 
 
 

ID: (9,28)
= 0.2310675234

 
 
 

ID: (9,29)
= 0.2377312034

 
 
 

ID: (9,30)
= 0.2397586107

 
 
 

ID: (9,31)
= 0.2427033633

 
 
 

ID: (9,32)
= 0.2482500970

 
 
 

ID: (9,33)
= 0.2650340199

 
 
 

ID: (9,34)
= 0.2679491937

 
 
 

ID: (9,35)
= 0.2679491937

 
 
 

ID: (9,36)
= 0.2679491937

 
 
 

ID: (9,37)
= 0.2679491937

 
 
 

ID: (9,38)
= 0.2824704349

 
 
 

ID: (9,39)
= 0.3046890795

 
 
 

ID: (9,40)
= 0.3157595992

 
 
 

ID: (9,41)
= 0.3271763027

 
 
 

ID: (9,42)
= 0.3571597934

 
 
 

ID: (9,43)
= 0.3819660246

 
 
 

ID: (9,44)
= 0.3819660246

 
 
 

ID: (9,45)
= 0.3819660246

 
 
 

ID: (9,46)
= 0.4427980781

 
 
 

ID: (9,47)
= 1.0000000000

 
 
 



Because the structures of the 5S rRNA database could not be located in 2010 and was produced using Mfold in 2004:

Tree (9,13) has been corrected from existing in (2004) to RNA-like in (2010)
Page | by Dr. Radut